Motif View

Internal ID 19093857
Source Database TransTermHP TERM 692
Feature Type terminator
Name
Rho-independent transcription terminator TERM 692
Sequence GGCCAACGCTTAGCGTTGGCC
Look for more occurrences
Start 3220423
End 3220443
Strand -
Genomic Context
Replicon Pseudomonas trivialis strain IHBB745, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCACTCAATAAAAAA(5' tail) GGCCAACGC(5' stem) TAA(loop) GCGTTGGCC(3' stem) TTTTTTGTGTTTGCG(3' tail). Confidence: 100. opp_overlap 3220423

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685