Motif View

Internal ID 19089601
Source Database TransTermHP TERM 1244
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1244
Sequence GGCCGCCAGCGGTTGCCCGCCGGCGGCC
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Start 4690970
End 4690997
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain F22031, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCATTCATGCAAAA(5' tail) GGCCGCCGGCGG(5' stem) GCAA(loop) CCGCTGGCGGCC(3' stem) TTTTTTTTCGTACTG(3' tail). Confidence: 100. opp_overlap 4690970

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685