Motif View

Internal ID 19089572
Source Database TransTermHP TERM 1199
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1199
Sequence GGGCGGCCTAGGCCGCCC
Look for more occurrences
Start 4561462
End 4561479
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain F22031, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATCCATCATGAAAAA(5' tail) GGGCGGC(5' stem) CTAG(loop) GCCGCCC(3' stem) TTTTTCGTTTTCCCC(3' tail). Confidence: 100. opp_overlap 4561462, overlap 4561456 4561455

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685