Motif View

Internal ID 19085320
Source Database TransTermHP TERM 38
Feature Type terminator
Name
Rho-independent transcription terminator TERM 38
Sequence GCCAACCCACGAGGGTTGGC
Look for more occurrences
Start 137098
End 137117
Strand -
Genomic Context
Replicon Pseudomonas veronii strain R4 scaffold00001, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCGCCAACAAAAAA(5' tail) GCCAACCC(5' stem) TCGT(loop) GGGTTGGC(3' stem) TTTTTAGCACAGCGA(3' tail). Confidence: 100. opp_overlap 137098

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685