Motif View

Internal ID 19085177
Source Database TransTermHP TERM 155
Feature Type terminator
Name
Rho-independent transcription terminator TERM 155
Sequence TAAAGCCCGATAATTATCGGGCTTTA
Look for more occurrences
Start 655299
End 655324
Strand +
Genomic Context
Replicon Pseudomonas tuomuerensis strain JCM 14085 PT85_4, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAATAATTACTCTAA(5' tail) TAAAGCCCGAT(5' stem) AATT(loop) ATCGGGCTTTA(3' stem) TTTTTTATTCGAGAC(3' tail). Confidence: 100. opp_overlap 655303

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685