Motif View

Internal ID 19084291
Source Database TransTermHP TERM 72
Feature Type terminator
Name
Rho-independent transcription terminator TERM 72
Sequence CGGTGCCCCGTGAGCACCG
Look for more occurrences
Start 375400
End 375418
Strand -
Genomic Context
Replicon Pseudomonas taetrolens strain DSM 21104 3_672223_44.3836, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTGGGCATAAAAAAA(5' tail) CGGTGCTC(5' stem) ACG(loop) GGGCACCG(3' stem) TTTTTTCATCTGCCT(3' tail). Confidence: 100. opp_overlap 375400 375390

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685