Motif View

Internal ID 19083938
Source Database TransTermHP TERM 92
Feature Type terminator
Name
Rho-independent transcription terminator TERM 92
Sequence GCCTCCTTTATCGGAGGC
Look for more occurrences
Start 255263
End 255280
Strand +
Genomic Context
Replicon Pseudomonas taetrolens strain DSM 21104 1_766794_46.3544, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGGATTATCAAAA(5' tail) GCCTCC(5' stem) TTTATC(loop) GGAGGC(3' stem) TTTTTGTTTTCAGGG(3' tail). Confidence: 100. opp_overlap 255263

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685