Motif View

Internal ID 19079696
Source Database TransTermHP TERM 14
Feature Type terminator
Name
Rho-independent transcription terminator TERM 14
Sequence CCCCGGTGAAAGCCGGGG
Look for more occurrences
Start 44709
End 44726
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. tomato strain NYS-T1 Contig8, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCACACAAACAAAAA(5' tail) CCCCGGC(5' stem) TTTC(loop) ACCGGGG(3' stem) TAGATGTTTGATCAA(3' tail). Confidence: 100. opp_overlap 44706 44703

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685