Motif View

Internal ID 19079073
Source Database TransTermHP TERM 1065
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1065
Sequence CCCGGCCTAGCGTCGGG
Look for more occurrences
Start 4819769
End 4819785
Strand +
Genomic Context
Replicon Pseudomonas syringae pv. syringae B301D, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCGTCATCGAAAAA(5' tail) CCCGGC(5' stem) CTAGC(loop) GTCGGG(3' stem) TTTTTTATGTTTTTC(3' tail). Confidence: 100. opp_overlap 4819769, overlap 4819759

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685