Motif View

Internal ID 19077863
Source Database TransTermHP TERM 616
Feature Type terminator
Name
Rho-independent transcription terminator TERM 616
Sequence GCCCCGTGAGCGATCACGGGGC
Look for more occurrences
Start 2602270
End 2602291
Strand +
Genomic Context
Replicon Pseudomonas syringae pv. syringae HS191, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCGGTAAACGAAAA(5' tail) GCCCCGTGA(5' stem) GCGA(loop) TCACGGGGC(3' stem) TTTTTGCTTTCTACG(3' tail). Confidence: 100. opp_overlap 2602264 2602270, overlap 2602264 2602263

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685