Motif View

Internal ID 19073671
Source Database TransTermHP TERM 958
Feature Type terminator
Name
Rho-independent transcription terminator TERM 958
Sequence CGCTGCGGTGCGCAAGGCGCCGCAGCG
Look for more occurrences
Start 4110700
End 4110726
Strand +
Genomic Context
Replicon Pseudomonas syringae CC1557, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGATGCCGACAAC(5' tail) CGCTGCGGTGC(5' stem) GCAAG(loop) GCGCCGCAGCG(3' stem) TAGCTTCAGAGCAGA(3' tail). Confidence: 90. opp_overlap 4110699 4110700

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685