Motif View

Internal ID 19073237
Source Database TransTermHP TERM 278
Feature Type terminator
Name
Rho-independent transcription terminator TERM 278
Sequence CCCGGCCATGCGCCGGG
Look for more occurrences
Start 1025007
End 1025023
Strand -
Genomic Context
Replicon Pseudomonas syringae CC1557, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCCATAAAAAA(5' tail) CCCGGC(5' stem) GCATG(loop) GCCGGG(3' stem) TTCTTCAGGGTTGCC(3' tail). Confidence: 100. opp_overlap 1025007

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685