Motif View

Internal ID 19069317
Source Database TransTermHP TERM 35
Feature Type terminator
Name
Rho-independent transcription terminator TERM 35
Sequence GGCCCTTCGGGGCC
Look for more occurrences
Start 170793
End 170806
Strand +
Genomic Context
Replicon Pseudomonas stutzeri strain NT0128 249_429018_65821923_23____28, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCGGTGACAGAAAG(5' tail) GGCCC(5' stem) TTCG(loop) GGGCC(3' stem) TTTTTTGTTTCGGGC(3' tail). Confidence: 100. opp_overlap 170792 170793, overlap 170786

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685