Motif View

Internal ID 19061774
Source Database TransTermHP TERM 86
Feature Type terminator
Name
Rho-independent transcription terminator TERM 86
Sequence CCCCTGAGGGAGCCACCCTCCCTCAGGCG
Look for more occurrences
Start 297355
End 297383
Strand -
Genomic Context
Replicon Pseudomonas sp. RIT288 contigs2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCAGCAGGTAACAGA(5' tail) CGCCTGAGGGAG(5' stem) GGTGG(loop) CTCCCTCAGGGG(3' stem) ATAAGGTTAGTCAGG(3' tail). Confidence: 91. overlap 297353 297351

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685