| Internal ID | 19061295 | Source Database | TransTermHP TERM 175 |
| Feature Type | terminator |
| Name |
Rho-independent transcription terminator TERM 175
|
| Sequence |
ATCGCTGCCTTCGGCAACTCCTACACCGATATCTGTAGGAGCTGCCGAAGGCTGCGATC Look for more occurrences |
| Start | 568885 |
| End | 568943 |
| Strand | + |
| Genomic Context | |
| Replicon | Pseudomonas sp. RIT288 contigs1, whole genome shotgun sequence. |
| Evidence |
ECO:0000246
computational combinatorial evidence used in automatic assertion
|
| Additional Comments | CCTGAAGATCAGAAG(5' tail) -ATCGCTGCCTTCGGCAACTCCTACA(5' stem) CCGATATC(loop) TGTAGGAGCTGCCGAAGGCTGCGATC(3' stem) TTTTGATCTGCTGGA(3' tail). Confidence: 100. gap 1, opp_overlap 568884 568886, overlap 568886 |
|
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685
|