Motif View

Internal ID 19057930
Source Database TransTermHP TERM 813
Feature Type terminator
Name
Rho-independent transcription terminator TERM 813
Sequence GAGCCCCTCGGGGCTC
Look for more occurrences
Start 4055704
End 4055719
Strand -
Genomic Context
Replicon Pseudomonas sp. MT-1.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGCCGCAAAAAAAA(5' tail) GAGCCC(5' stem) CGAG(loop) GGGCTC(3' stem) TTCTTGTCACTGGGA(3' tail). Confidence: 100. opp_overlap 4055704

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685