Motif View

Internal ID 19055239
Source Database TransTermHP TERM 20
Feature Type terminator
Name
Rho-independent transcription terminator TERM 20
Sequence CGGCGCCCATGGGCGCCG
Look for more occurrences
Start 47668
End 47685
Strand -
Genomic Context
Replicon Pseudomonas sp. ML96 ML96_Contig_2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCTGAACAGAAGAA(5' tail) CGGCGCC(5' stem) CATG(loop) GGCGCCG(3' stem) TTTCTGCTTACTTCT(3' tail). Confidence: 90. opp_overlap 47668

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685