Motif View

Internal ID 19050472
Source Database TransTermHP TERM 1334
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1334
Sequence GGCCGCTCCTACAGGGATACGCGATTTCCTGTAGGAGCGGCC
Look for more occurrences
Start 4460057
End 4460098
Strand -
Genomic Context
Replicon Pseudomonas sp. FGI182, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTTTCGCGACACAA(5' tail) GGCCGCTCCTACAGGAA(5' stem) ATCGCGTA(loop) TCCCTGTAGGAGCGGCC(3' stem) TTGTGTCGCGATGGG(3' tail). Confidence: 100. opp_overlap 4460057

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685