Motif View

Internal ID 19050449
Source Database TransTermHP TERM 1288
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1288
Sequence GGCGACCCTGGAGGTCGCC
Look for more occurrences
Start 4352282
End 4352300
Strand +
Genomic Context
Replicon Pseudomonas sp. FGI182, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCAGAACGAAAAAA(5' tail) GGCGACC(5' stem) CTGGA(loop) GGTCGCC(3' stem) TTTTTCATGCCTGCA(3' tail). Confidence: 100. opp_overlap 4352282

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685