Motif View

Internal ID 19049731
Source Database TransTermHP TERM 9
Feature Type terminator
Name
Rho-independent transcription terminator TERM 9
Sequence GGCCGCTCCTACAGGAGACCGCGATCCCTTGTAGGAGCGGCC
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Start 22794
End 22835
Strand -
Genomic Context
Replicon Pseudomonas sp. FGI182, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTTTCGCGACACAA(5' tail) GGCCGCTCCTACAAGGGA(5' stem) TCGCGG(loop) TCTCCTGTAGGAGCGGCC(3' stem) TTGTGTCGCGATGGG(3' tail). Confidence: 100. opp_overlap 22794 22832

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685