Motif View

Internal ID 19047442
Source Database TransTermHP TERM 25
Feature Type terminator
Name
Rho-independent transcription terminator TERM 25
Sequence GCCCGCTTCGGCGGGC
Look for more occurrences
Start 45727
End 45742
Strand -
Genomic Context
Replicon Pseudomonas sp. DSM 29166 5_405642_36.1683, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTCAGGCAAAAAGAA(5' tail) GCCCGC(5' stem) CGAA(loop) GCGGGC(3' stem) ATGGGGCGCTAGTCC(3' tail). Confidence: 100. overlap 45724

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685