Motif View

Internal ID 19046776
Source Database TransTermHP TERM 14
Feature Type terminator
Name
Rho-independent transcription terminator TERM 14
Sequence GCGACGGCTACACTCTGCGTAGCCGTCGTC
Look for more occurrences
Start 59018
End 59047
Strand -
Genomic Context
Replicon Pseudomonas sp. DSM 29166 13_82260_36.5812, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCATAGGCAAAAAAA(5' tail) GACGACGGCTACGC(5' stem) AGA(loop) GTGTAGCCGTCG-C(3' stem) AGACAAGCGTTTAAC(3' tail). Confidence: 100. gap 1, overlap 59020

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685