Motif View

Internal ID 19045774
Source Database TransTermHP TERM 25
Feature Type terminator
Name
Rho-independent transcription terminator TERM 25
Sequence GCCCGCTTCGGCGGGC
Look for more occurrences
Start 81869
End 81884
Strand +
Genomic Context
Replicon Pseudomonas sp. DSM 29165 12_166604_24.976, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGACTAGCGCCCCAT(5' tail) GCCCGC(5' stem) TTCG(loop) GCGGGC(3' stem) TTCTTTTTGCCTGAA(3' tail). Confidence: 100. overlap 81866

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685