Motif View

Internal ID 19043801
Source Database TransTermHP TERM 21
Feature Type terminator
Name
Rho-independent transcription terminator TERM 21
Sequence GGGCCGTGTCACTCAGTGACATGGCCC
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Start 62009
End 62035
Strand -
Genomic Context
Replicon Pseudomonas sp. DSM 28140 15_79301_34.6876, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGTTCTATAAAAAA(5' tail) GGGCCATGTCAC(5' stem) TGA(loop) GTGACACGGCCC(3' stem) TTTGACGATCACCGA(3' tail). Confidence: 100. opp_overlap 62009

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685