Motif View

Internal ID 19043454
Source Database TransTermHP TERM 1041
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1041
Sequence CCCGGCCTCGTGCCGGG
Look for more occurrences
Start 4870365
End 4870381
Strand +
Genomic Context
Replicon Pseudomonas sp. CCOS191 genome assembly Pseudomonas sp. strain CCOS191, chromosome : I.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAGCCTGCAAAAAGA(5' tail) CCCGGC(5' stem) CTCGT(loop) GCCGGG(3' stem) TTTTTTGTTGCCTGG(3' tail). Confidence: 100. opp_overlap 4870363 4870365, overlap 4870357

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685