| Internal ID | 19040630 | Source Database | TransTermHP TERM 54 |
| Feature Type | terminator |
| Name |
Rho-independent transcription terminator TERM 54
|
| Sequence |
CCGCTTGTAAGAAAAAGCCCGCCGTCGCTGCGGGCTTTTTCATGCCTGATG Look for more occurrences |
| Start | 220329 |
| End | 220379 |
| Strand | - |
| Genomic Context | |
| Replicon | Pseudomonas sp. ARP3 contig5, whole genome shotgun sequence. |
| Evidence |
ECO:0000246
computational combinatorial evidence used in automatic assertion
|
| Additional Comments | GCATAAGACTAAAAA(5' tail) CATCAGGCATGAAAAAGCCCGCAG(5' stem) CGA(loop) CGGCGGGCTTTTTCTTACAAGCGG(3' stem) GTGACTGACCTCAGA(3' tail). Confidence: 91. opp_overlap 220345 220377, overlap 220334 220345 |
|
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685
|