Motif View

Internal ID 19036615
Source Database TransTermHP TERM 93
Feature Type terminator
Name
Rho-independent transcription terminator TERM 93
Sequence GCCCGGCAGATGCCGGGC
Look for more occurrences
Start 184011
End 184028
Strand -
Genomic Context
Replicon Pseudomonas sp. 21 contig5, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGCATGACGAAGAA(5' tail) GCCCGGC(5' stem) ATCT(loop) GCCGGGC(3' stem) TTTTTTTGCTCTTTT(3' tail). Confidence: 91. opp_overlap 184011

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685