Motif View

Internal ID 19034758
Source Database TransTermHP TERM 114
Feature Type terminator
Name
Rho-independent transcription terminator TERM 114
Sequence GCCCCCTGATCTTCAGGGGGC
Look for more occurrences
Start 673227
End 673247
Strand -
Genomic Context Located within gene ligD
Replicon Pseudomonas sp. 12M76_air.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACAGCCCCAAAAAA(5' tail) GCCCCCTGA(5' stem) AGA(loop) TCAGGGGGC(3' stem) TTTTGCGTTCAGCTG(3' tail). Confidence: 100. opp_overlap 673227

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685