Motif View

Internal ID 19032732
Source Database TransTermHP TERM 22
Feature Type terminator
Name
Rho-independent transcription terminator TERM 22
Sequence TGCCCGGCTTGCCGGGCA
Look for more occurrences
Start 102223
End 102240
Strand -
Genomic Context
Replicon Pseudomonas simiae strain MEB105 contig_7, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCCAGGCAAAAAAA(5' tail) TGCCCGG(5' stem) CAAG(loop) CCGGGCA(3' stem) TCTTTTTTATGCGTA(3' tail). Confidence: 100. opp_overlap 102221 102223, overlap 102209 102208

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685