Motif View

Internal ID 19032079
Source Database TransTermHP TERM 57
Feature Type terminator
Name
Rho-independent transcription terminator TERM 57
Sequence CGGCGGAGCACATCCGCCG
Look for more occurrences
Start 190977
End 190995
Strand -
Genomic Context
Replicon Pseudomonas simiae strain MEB105 contig_14, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAAAACCAGAATAAA(5' tail) CGGCGGA(5' stem) TGTGC(loop) TCCGCCG(3' stem) TCCGGGGACTCGACT(3' tail). Confidence: 95.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685