Motif View

Internal ID 19029150
Source Database TransTermHP TERM 660
Feature Type terminator
Name
Rho-independent transcription terminator TERM 660
Sequence TGCCCGGCTTGCCGGGCA
Look for more occurrences
Start 3770535
End 3770552
Strand +
Genomic Context
Replicon Pseudomonas rhizosphaerae strain DSM 16299, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGTTCGGAAAAAAA(5' tail) TGCCCGG(5' stem) CTTG(loop) CCGGGCA(3' stem) TTTTTTTGCCTGCGA(3' tail). Confidence: 100. opp_overlap 3770535, overlap 3770521

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685