| Internal ID | 19023574 | Source Database | TransTermHP TERM 49 |
| Feature Type | terminator |
| Name |
Rho-independent transcription terminator TERM 49
|
| Sequence |
TGAGACCGCGCGGCCTTCTTCGCGGCTAAACCCGCGAAGAAGGCCGCGCGGTACCGGCA Look for more occurrences |
| Start | 146267 |
| End | 146325 |
| Strand | + |
| Genomic Context | |
| Replicon | Pseudomonas putida KG-4 contig00005, whole genome shotgun sequence. |
| Evidence |
ECO:0000246
computational combinatorial evidence used in automatic assertion
|
| Additional Comments | AGTGCTGCCTTGACC(5' tail) TG--AG-ACCGCGCGGCCTTCTTCGCGG(5' stem) CTAAAC(loop) CCGCGAAGAAGGCCGCGCGGTACCGGCA(3' stem) GTTATACTGTTGCCA(3' tail). Confidence: 100. gap 3, opp_overlap 146297 146298 146309, overlap 146268 |
|
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685
|