Motif View

Internal ID 19021132
Source Database TransTermHP TERM 153
Feature Type terminator
Name
Rho-independent transcription terminator TERM 153
Sequence GCCGACCCACTTGTGGGTCGGC
Look for more occurrences
Start 586212
End 586233
Strand -
Genomic Context
Replicon Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCGGCAACAAAAAA(5' tail) GCCGACCCA(5' stem) CAAG(loop) TGGGTCGGC(3' stem) TTCCAATAACAATCC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685