Motif View

Internal ID 19018450
Source Database TransTermHP TERM 1659
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1659
Sequence GGCGACTTCGGTCGCC
Look for more occurrences
Start 5826334
End 5826349
Strand -
Genomic Context
Replicon Pseudomonas putida strain DLL-E4, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGGCCAACAAAAAA(5' tail) GGCGAC(5' stem) CGAA(loop) GTCGCC(3' stem) CTTTTTCAAATGCAG(3' tail). Confidence: 100. opp_overlap 5826333 5826334

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685