Motif View

Internal ID 19009023
Source Database TransTermHP TERM 243
Feature Type terminator
Name
Rho-independent transcription terminator TERM 243
Sequence GCCGACCCATTCGTGGGTCGGC
Look for more occurrences
Start 1102871
End 1102892
Strand -
Genomic Context
Replicon Pseudomonas parafulva strain CRS01-1, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACGCGCATAAAAAA(5' tail) GCCGACCCA(5' stem) CGAA(loop) TGGGTCGGC(3' stem) TTCTCAATAATCCGT(3' tail). Confidence: 100. opp_overlap 1102871

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685