Motif View

Internal ID 19007315
Source Database TransTermHP TERM 1229
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1229
Sequence GCCCCGATCAGATCGGGGC
Look for more occurrences
Start 4491007
End 4491025
Strand -
Genomic Context
Replicon Pseudomonas moraviensis R28-S chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGAGAAAGCAAAAA(5' tail) GCCCCGAT(5' stem) CTG(loop) ATCGGGGC(3' stem) TTTTTTATGGGCGAT(3' tail). Confidence: 100. opp_overlap 4491007

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685