Motif View

Internal ID 19006852
Source Database TransTermHP TERM 568
Feature Type terminator
Name
Rho-independent transcription terminator TERM 568
Sequence GCCCCGCTTTGGCGGGGC
Look for more occurrences
Start 2046898
End 2046915
Strand -
Genomic Context
Replicon Pseudomonas moraviensis R28-S chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCAAAAACCAAAAA(5' tail) GCCCCGC(5' stem) CAAA(loop) GCGGGGC(3' stem) TTCTAAACAACATCA(3' tail). Confidence: 100. opp_overlap 2046898

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685