Motif View

Internal ID 18998143
Source Database TransTermHP TERM 87
Feature Type terminator
Name
Rho-independent transcription terminator TERM 87
Sequence GCCCACCGATTGGTGGGC
Look for more occurrences
Start 264941
End 264958
Strand -
Genomic Context
Replicon Pseudomonas lini strain DSM 16768 2_928492_19.6844, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCAGCCAACAAAAA(5' tail) GCCCACC(5' stem) AATC(loop) GGTGGGC(3' stem) TTCGTGTTTACCGCG(3' tail). Confidence: 100. opp_overlap 264941 264935, overlap 264935

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685