Motif View

Internal ID 18991383
Source Database TransTermHP TERM 99
Feature Type terminator
Name
Rho-independent transcription terminator TERM 99
Sequence CGGCCTGGCCTGACCAGGCCG
Look for more occurrences
Start 624670
End 624690
Strand -
Genomic Context
Replicon Pseudomonas frederiksbergensis strain SI8 contig00002, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAACACAAATGAAAA(5' tail) CGGCCTGG(5' stem) TCAGG(loop) CCAGGCCG(3' stem) TTAACAATTGTAATA(3' tail). Confidence: 100. opp_overlap 624664 624663

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685