Motif View

Internal ID 18988464
Source Database TransTermHP TERM 64
Feature Type terminator
Name
Rho-independent transcription terminator TERM 64
Sequence CCCATGAGCGATCATGGG
Look for more occurrences
Start 301740
End 301757
Strand +
Genomic Context
Replicon Pseudomonas fluorescens strain AU5633 Contig_51, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGAAACGCAAAAA(5' tail) CCCATGA(5' stem) GCGA(loop) TCATGGG(3' stem) TTTTTTTATGGCTGA(3' tail). Confidence: 100. opp_overlap 301740

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685