| Internal ID | 18986069 | Source Database | TransTermHP TERM 40 |
| Feature Type | terminator |
| Name |
Rho-independent transcription terminator TERM 40
|
| Sequence |
CCGACCTTGTAGTGGCTGCCGCAGGCTGCGGCGGCGACTACTTGTCGAG Look for more occurrences |
| Start | 115150 |
| End | 115198 |
| Strand | + |
| Genomic Context | Located within gene [AA055_RS20130] |
| Replicon | Pseudomonas fluorescens strain AU11136 Contig_51, whole genome shotgun sequence. |
| Evidence |
ECO:0000246
computational combinatorial evidence used in automatic assertion
|
| Additional Comments | TAACGCGCCCGCCGA(5' tail) C-CGACCTTGTAGTGGCTGCCGCA(5' stem) GGC(loop) TGCGGCGGCGACTACTTG-TCGAG(3' stem) TTTTTTCAAAAACAC(3' tail). Confidence: 100. opp_overlap 115109 115107 115108 115138, overlap 115109 115108 115150 115158 115194 115195 |
|
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685
|