Motif View

Internal ID 18985208
Source Database TransTermHP TERM 136
Feature Type terminator
Name
Rho-independent transcription terminator TERM 136
Sequence GCCCGCAGCGACGGCGGGC
Look for more occurrences
Start 551455
End 551473
Strand -
Genomic Context
Replicon Pseudomonas fluorescens strain AU12597 Contig_37, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTGCTTGAAAAAAAA(5' tail) GCCCGCCG(5' stem) TCG(loop) CTGCGGGC(3' stem) TTTTTTGCGAGTGCC(3' tail). Confidence: 100. opp_overlap 551455

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685