Motif View

Internal ID 18969897
Source Database TransTermHP TERM 3
Feature Type terminator
Name
Rho-independent transcription terminator TERM 3
Sequence GACCCGGCTCTTGCCGGGTC
Look for more occurrences
Start 13164
End 13183
Strand +
Genomic Context
Replicon Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_7, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TAATCACGGTTATTT(5' tail) GACCCGGC(5' stem) TCTT(loop) GCCGGGTC(3' stem) TTTTTTTGCCTGTGA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685