Motif View

Internal ID 18967799
Source Database TransTermHP TERM 1199
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1199
Sequence CGGCCCGCCTTTTGGTGGGCCG
Look for more occurrences
Start 5418664
End 5418685
Strand +
Genomic Context
Replicon Pseudomonas fluorescens PICF7, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGATGGTCTAAACGA(5' tail) CGGCCCGCC(5' stem) TTTT(loop) GGTGGGCCG(3' stem) TTGTGCATGTGATGA(3' tail). Confidence: 95. opp_overlap 5418661 5418664, overlap 5418662

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685