Motif View

Internal ID 18965274
Source Database TransTermHP TERM 433
Feature Type terminator
Name
Rho-independent transcription terminator TERM 433
Sequence GCCCGCCACGGTCTTGCGCCGGGGCGGGC
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Start 1862246
End 1862274
Strand +
Genomic Context
Replicon Pseudomonas fluorescens strain PCL1751, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTCGCTCGATCATAA(5' tail) GCCCGCCACGGT(5' stem) CTTGC(loop) GCCGGGGCGGGC(3' stem) TTTTTATTGCCCGAG(3' tail). Confidence: 100. opp_overlap 1862231 1862246

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685