Motif View

Internal ID 18965206
Source Database TransTermHP TERM 345
Feature Type terminator
Name
Rho-independent transcription terminator TERM 345
Sequence CCGCTTCCCTCACCGGAAGCGG
Look for more occurrences
Start 1500464
End 1500485
Strand -
Genomic Context
Replicon Pseudomonas fluorescens strain PCL1751, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGAGGCATAAAAAAA(5' tail) CCGCTTCC(5' stem) GGTGAG(loop) GGAAGCGG(3' stem) TTTTTTTTGCAGCGG(3' tail). Confidence: 100. opp_overlap 1500464, overlap 1500452

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685