Motif View

Internal ID 18954044
Source Database TransTermHP TERM 637
Feature Type terminator
Name
Rho-independent transcription terminator TERM 637
Sequence CTGACGTCGCCCCTGGCGGCGTCAG
Look for more occurrences
Start 2980646
End 2980670
Strand +
Genomic Context
Replicon Pseudomonas fluorescens strain UK4, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TAAGAGAGCCACAAC(5' tail) CTGACGTCGCC(5' stem) CCT(loop) GGCGGCGTCAG(3' stem) ATTTTGCTACCTTGC(3' tail). Confidence: 100. opp_overlap 2980646 2980645, overlap 2980645

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685