Motif View

Internal ID 18934921
Source Database TransTermHP TERM 312
Feature Type terminator
Name
Rho-independent transcription terminator TERM 312
Sequence CCGGCCTTCGGGCCGG
Look for more occurrences
Start 1472263
End 1472278
Strand +
Genomic Context
Replicon Pseudomonas cremoricolorata strain ND07, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCATCCACAAAAAAA(5' tail) CCGGCC(5' stem) TTCG(loop) GGCCGG(3' stem) TTTCTTGTGCAGCGA(3' tail). Confidence: 93. opp_overlap 1472251 1472263

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685