Motif View

Internal ID 18931487
Source Database TransTermHP TERM 882
Feature Type terminator
Name
Rho-independent transcription terminator TERM 882
Sequence CGGCCTGGCCCTGCCCAGGCCG
Look for more occurrences
Start 3564784
End 3564805
Strand -
Genomic Context
Replicon Pseudomonas chlororaphis strain PCL1606, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAGCACAAATGAAAA(5' tail) CGGCCTGG(5' stem) GCAGGG(loop) CCAGGCCG(3' stem) TGAATAATTGTAAAA(3' tail). Confidence: 100. opp_overlap 3564780

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685