Motif View

Internal ID 18930469
Source Database TransTermHP TERM 70
Feature Type terminator
Name
Rho-independent transcription terminator TERM 70
Sequence CGCCCTTGAGAGCACTCTCAAGGGCG
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Start 300595
End 300620
Strand +
Genomic Context
Replicon Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGCCTGATGACAA(5' tail) CGCCCTTGAGA(5' stem) GCAC(loop) TCTCAAGGGCG(3' stem) TTGTTGTTTGTGGCA(3' tail). Confidence: 100. opp_overlap 300595, overlap 300592

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685